SNP Profiles matching NA 33

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CC	TT	TT	AC	TT	GT	CC	CC	AA	GG	CC	AG
1._RUQ_1577	_	AA	CC	TT	_	_	_	GT	_	_	_	_	CC	AG
2._NA_33	CC	AA	CC	TT	TT	AC	TT	GT	CC	CC	AA	GG	CC	AG
3._RUQ_1238	_	AG	CC	TT	_	_	_	GT	_	_	_	_	CC	AG
4._POUND_25_/A	CC	AA	CG	TT	TT	AC	TT	GT	CC	CC	AA	GG	CC	AG
5._SPA_9_[COL]	CC	AA	CG	TT	TT	AC	TT	GT	CC	CC	AA	GG	CC	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CC	CC	CG	GG	AG	CT	AA	GG	GG	CT	CC
1._RUQ_1577	_	_	_	_	CC	CG	GG	_	CT	AA	GG	GG	CT	CC
2._NA_33	TT	AA	GG	CC	CC	CG	GG	AG	CT	AA	GG	GG	CT	CC
3._RUQ_1238	_	_	_	_	CC	CG	GG	_	CC	AC	GG	GG	CT	CC
4._POUND_25_/A	TT	AA	GG	CC	CC	CG	GT	AA	CC	AA	GG	GG	CT	CC
5._SPA_9_[COL]	TT	AA	GG	CC	CC	CG	GG	AA	CC	AA	GG	GG	TT	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CT	AG	CG	AC	CC	GG	CC	TT	GG	X_X	X_X
1._RUQ_1577	AA	_	AA	CT	AG	CG	AC	CC	GG	CC	_	_	X_X	X_X
2._NA_33	AA	GG	AA	CT	AG	GG	AC	CC	GG	CC	TT	GG	X_X	X_X
3._RUQ_1238	AA	_	AA	CC	AG	CG	AA	CC	GG	CC	_	_	X_X	X_X
4._POUND_25_/A	AA	GG	AA	CT	GG	CG	AC	CC	TT	CC	TT	GG	X_X	X_X
5._SPA_9_[COL]	AA	GG	AA	CT	AA	CG	AC	CT	GG	AC	TT	GG	X_X	X_X

Input profile: NA_33 RUQ_1577

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

1._NA_33 RUQ_1577

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._NA_33

97.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A D371 T2

Dapeng Zhang, 2016

3._NA_670 RUQ_1238

91.7 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._POUND_25_/A

90 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F452 T9

Dapeng Zhang, 2016

5._SPA_9_[COL]

90 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 2 X1 Y17

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25

SNP Profiles matching NA 33

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Input profile: NA_33 RUQ_1577

1._NA_33 RUQ_1577

97.9 % 24 shared markers

2._NA_33

97.5 % 40 shared markers

3._NA_670 RUQ_1238

91.7 % 24 shared markers

4._POUND_25_/A

90 % 40 shared markers

5._SPA_9_[COL]

90 % 40 shared markers

97.9 %
24 shared markers

97.5 %
40 shared markers

91.7 %
24 shared markers

90 %
40 shared markers

90 %
40 shared markers